Dear Dr. Shirts!
Could you tell me is there any difference of different Tau_t ussage ( inverse friction in case of Stochastic dynamics) for simulation of water-soluble as well as membrane-proteins ? In the first case I'm using tau_t 2ps that is lower than internal water friction. In the second case one part of protein could be in the membrane ( e.g helixes) but other ( e.g loops) in water media. Both of that solvents have different characteristic viscousity. So what Tau_t should be used in stochastic dynamics for such biphastic systems? James 2012/12/12 Jong Wha Lee <jongwh...@postech.ac.kr>: > Thank you very much Justin, and thank you very much Michael. Your replies > were of a great help. > > > > > > Jong Wha > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
