Maria,
You can place the export command in your .profile. That will get them to work.
Use something like env | grep CPPFLAGS to make sure those settings are active
before compiling gromacs.
Best regards.
> Message: 6
> Date: Thu, 27 Dec 2012 11:31:10 +0100
> From: maria goranovic <mariagorano...@gmail.com>
> Subject: [gmx-users] fftw3f errors despite having the right libraries
> in the right places installation on MAC
> To: Discussion list for GROMACS users <gmx-users@gromacs.org>
> Message-ID:
> <CACBzZ9iCx24zq21AcRiCsLRgSJ2TJ_1Hp=v8npotjkzv+p9...@mail.gmail.com>
> Content-Type: text/plain; charset=ISO-8859-1
>
> Dear All
>
> I am trying to install 4.5.5 on my mac. I have installed fftw3 with
> --enable-float, and have used the CPPFLAGS and LDFLAGS options in my
> .bashrc file. GROMACS still complains that "configure: error: Cannot find
> fftw3f library".
>
> Why is it not able to find the libraries?
>
> Here are the specific details:
>
> content of .bashrc:
>
> export CPPFLAGS="-I/usr/local/include"
> export LDFLAGS="-L/usr/local/lib"
>
> % ls /usr/local/lib/*fft*
> /usr/local/lib/libfftw3f.a /usr/local/lib/libfftw3f.la
>
> % ls /usr/local/include/*fft*
> /usr/local/include/fftw3.f /usr/local/include/fftw3.f03
> /usr/local/include/fftw3.h /usr/local/include/fftw3l.f03
> /usr/local/include/fftw3q.f03
>
> Any ideas what might be going wrong?
>
> Thank you
>
>
> --
> Maria G.
> Technical University of Denmark
> Copenhagen
>
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