turned out to be a sudo problem. without sudo, the compiler could not look into the root directories. sorry for spamming :(
On Thu, Dec 27, 2012 at 2:25 PM, maria goranovic <mariagorano...@gmail.com>wrote: > Yes, I can see them in printenv > > does this have anything to do with single or double precision? > > > On Thu, Dec 27, 2012 at 1:38 PM, Mark Abraham <mark.j.abra...@gmail.com>wrote: > >> Are those variables actully showing up in your environment? >> >> On Thu, Dec 27, 2012 at 11:31 AM, maria goranovic >> <mariagorano...@gmail.com>wrote: >> >> > Dear All >> > >> > I am trying to install 4.5.5 on my mac. I have installed fftw3 with >> > --enable-float, and have used the CPPFLAGS and LDFLAGS options in my >> > .bashrc file. GROMACS still complains that "configure: error: Cannot >> find >> > fftw3f library". >> > >> > Why is it not able to find the libraries? >> > >> > Here are the specific details: >> > >> > content of .bashrc: >> > >> > export CPPFLAGS="-I/usr/local/include" >> > export LDFLAGS="-L/usr/local/lib" >> > >> > % ls /usr/local/lib/*fft* >> > /usr/local/lib/libfftw3f.a /usr/local/lib/libfftw3f.la >> > >> > % ls /usr/local/include/*fft* >> > /usr/local/include/fftw3.f /usr/local/include/fftw3.f03 >> > /usr/local/include/fftw3.h /usr/local/include/fftw3l.f03 >> > /usr/local/include/fftw3q.f03 >> > >> > Any ideas what might be going wrong? >> > >> > Thank you >> > >> > >> > -- >> > Maria G. >> > Technical University of Denmark >> > Copenhagen >> > -- >> > gmx-users mailing list gmx-users@gromacs.org >> > http://lists.gromacs.org/mailman/listinfo/gmx-users >> > * Please search the archive at >> > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> > * Please don't post (un)subscribe requests to the list. Use the >> > www interface or send it to gmx-users-requ...@gromacs.org. >> > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> > >> -- >> gmx-users mailing list gmx-users@gromacs.org >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> * Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> * Please don't post (un)subscribe requests to the list. Use the >> www interface or send it to gmx-users-requ...@gromacs.org. >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> > > > > -- > Maria G. > Technical University of Denmark > Copenhagen > -- Maria G. Technical University of Denmark Copenhagen -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists