@Justin, I did what you suggested, and I still can't load my molecule in VMD. Maybe I am still doing something wrong with the new line character thing.
Xu Dong Huang Chemical & Biochemical Engineering Rutgers School of Engineering xudo...@eden.rutgers.edu On Jan 9, 2013, at 7:22 PM, Xu Dong Huang <xudo...@eden.rutgers.edu> wrote: > @ Justin, > > I laughed. :) Thank you. I can't believe I miss the smallest and most > rudimentary things. > Thanks again, > Xu Dong Huang > Chemical & Biochemical Engineering > Rutgers School of Engineering > xudo...@eden.rutgers.edu > > On Jan 9, 2013, at 7:20 PM, Justin Lemkul <jalem...@vt.edu> wrote: > >> >> >> On 1/9/13 7:16 PM, Xu Dong Huang wrote: >>> @ Justin, >>> >>> Thanks for always saving me from my mistakes. But I don't quite understand >>> what is a new line character? >>> >> >> The thing you get when you press enter. >> >> http://en.wikipedia.org/wiki/Newline#In_programming_languages >> >> Note that Google has plenty more to say ;) >> >> There should not be a blank line at the end of the .gro file, though, but to >> be correctly parsed by VMD, the line must terminate with a '\n' character. >> So at the end of your box vector line, hit return then backspace. >> >> -Justin >> >> -- >> ======================================== >> >> Justin A. Lemkul, Ph.D. >> Research Scientist >> Department of Biochemistry >> Virginia Tech >> Blacksburg, VA >> jalemkul[at]vt.edu | (540) 231-9080 >> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin >> >> ======================================== >> -- >> gmx-users mailing list gmx-users@gromacs.org >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> * Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> * Please don't post (un)subscribe requests to the list. Use the www >> interface or send it to gmx-users-requ...@gromacs.org. >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
