On 1/17/13 7:37 AM, 라지브간디 wrote:
Dear all,
I have been trying to calculate and plot the secondary structure of helix
movements during the simulation on time through g_helix, g_helix orient,
g_principle and g_mindist but none of them shown the helix movements.
Is there any other tool can elaborate the helix movements ? Plz suggestion are
appreciated.
You'll have to define what you mean by "helix movements." Everything moves in a
simulation, but what is it that you're trying to quantify? If it's secondary
structure itself, use do_dssp. If you're after something else, you will have to
be more specific.
-Justin
--
========================================
Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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