Why don't you try rotating your simulation box using editconf (.gro) or trjconv (.xtc)
On Sat, Jan 19, 2013 at 5:39 AM, Mortuza Munna <mortuza...@yahoo.com> wrote: > Dear gromacs user, > I have found that g_bundle can measure the angle between a group from > index file and z-axis with the option -z. Is it possible to measure the > angle of that group from index file with y-axis/x-axis? Any suggestion will > be appreciable. > > Regards, > Mortuza > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- Rajat Desikan (Ph.D Scholar) Prof. K. Ganapathy Ayappa's Lab (no 13), Dept. of Chemical Engineering, Indian Institute of Science, Bangalore -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists