Thank you for the clarification. On Fri, Jan 25, 2013 at 12:40 AM, Justin Lemkul <jalem...@vt.edu> wrote:
> > > On 1/24/13 11:03 AM, Kavyashree M wrote: > >> Dear users, >> >> I have a little confusion - >> The hbmap.xpm file gives the existence of each hydrogen bond. >> The file mentions - >> " c #FFFFFF " /* "None" */, >> "o c #FF0000 " /* "Present" */, >> Meaning - >> character "<space>" in white colour means Hbond not present >> character "o" in red colour means Hbond is present. >> >> In addition, the file also contains white coloured "o" what is >> this? >> >> > There are only two characters in the .xpm file, a space and an 'o' as you > noted above. The font color that appears in your terminal is whatever you > have set it to be; there is no significance of different colored letters in > the .xpm file. There either is a hydrogen bond in a frame (in which case > you see 'o') or there is not (and thus a blank space). > > -Justin > > -- > ==============================**========== > > Justin A. Lemkul, Ph.D. > Research Scientist > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.**vt.edu/Pages/Personal/justin<http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin> > > ==============================**========== > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/**mailman/listinfo/gmx-users<http://lists.gromacs.org/mailman/listinfo/gmx-users> > * Please search the archive at http://www.gromacs.org/** > Support/Mailing_Lists/Search<http://www.gromacs.org/Support/Mailing_Lists/Search>before > posting! > * Please don't post (un)subscribe requests to the list. Use the www > interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read > http://www.gromacs.org/**Support/Mailing_Lists<http://www.gromacs.org/Support/Mailing_Lists> > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
