Hi! I have problem in running gromacs 4.6 in PBS queue... I end up with error:
[n370:03036] [[19430,0],0]-[[19430,1],8] mca_oob_tcp_msg_recv: readv failed: Connection reset by peer (104) -------------------------------------------------------------------------- mpirun noticed that process rank 18 with PID 616 on node n344 exited on signal 4 (Illegal instruction). -------------------------------------------------------------------------- [n370:03036] 3 more processes have sent help message help-opal-shmem-mmap.txt / mmap on nfs [n370:03036] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 3 total processes killed (some possibly by mpirun during cleanup) I run the same pbs files with older gromacs 4.5.5 (installed with the same openmpi, gcc and fftw) and everything is working.. also when I am running gromacs directly on the access node: mpirun -np 32 /home/users/didymos/gromacs/bin/mdrun_mpi -v -deffnm protein-EM-solvated -c protein-EM-solvated.gro it is running OK. Any ideas? Thank you! Best! tomek -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
