Dear Gromacs Users,
I am new to gromacs software and
currently in learning phase. Currently, I am facing a big problem. I have
two proteins namely A and B. Wet lab results have shown that both A and B
interacts with each other by co-immunoprecipitation techniques. Is there a
way out to know weather protein A really interacts with B through
simulation? Is it possible to simulate both the proteins together in a
single box without doing docking? Can simulation provide the interacting
regions? I want to incorporate both the proteins together in box without
docking. Please correct me if I am wrong.
With kind regards,
Amit Jaiswal,
Pondicherry University,
Pondicherry,
India.
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