That's probably a free-energy plot, made by some tool that works like g_sham. Every structure can be projected onto the coordinates of the underlying 2D histogram.
Mark On Thu, Mar 21, 2013 at 10:42 AM, Albert <mailmd2...@gmail.com> wrote: > Hello: > > I've finished a replica exchange simulation and I would like to make a > plot like: > > > http://ars.els-cdn.com/**content/image/1-s2.0-**S1093326303002006-gr4.jpg<http://ars.els-cdn.com/content/image/1-s2.0-S1093326303002006-gr4.jpg> > > I am just wondering how can associate your energy (the red/white color) > with 2D XY plot in the above figure? > > thank you very much > best > Albert > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/**mailman/listinfo/gmx-users<http://lists.gromacs.org/mailman/listinfo/gmx-users> > * Please search the archive at http://www.gromacs.org/** > Support/Mailing_Lists/Search<http://www.gromacs.org/Support/Mailing_Lists/Search>before > posting! > * Please don't post (un)subscribe requests to the list. Use the www > interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read > http://www.gromacs.org/**Support/Mailing_Lists<http://www.gromacs.org/Support/Mailing_Lists> > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists