On 3/26/13 11:24 AM, vidhya sankar wrote:
Dear Justin Thank you for your Previous reply,

                                                                                
      I want to calculate  Variation of deuterium order Parameter With respect 
to Time  for Entire Trajectory and Hydration Number of Phosphate oxygen For My 
Entire Trajectory .

Thereby I can Identify the Equilibration Time For My Membrane
Is There is Any Tool in gromacs?


I would suggest you consult the manual, Chapter 8 and Appendix D, where all the analysis tools are described in full.

-Justin

--
========================================

Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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