Dear all, Does that mean the atoms will shrink and adjust at the time inflategro step and this closely packed lipids will stay apart? Because as you said the energy of course will be high on selected atoms during first EM step. Could you suggest me that, can I proceed as such with my system, since there is no problem in grompp and EM step (except high energy on some atom).
or Do I need to manually remove those overlapping lipids and water molecules. Thanks in advance -- View this message in context: http://gromacs.5086.n6.nabble.com/Atoms-are-fused-after-inserting-in-membrane-tp5006620p5006675.html Sent from the GROMACS Users Forum mailing list archive at Nabble.com. -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
