if your -append option is activated (the default is yes), maybe Demux.pl reads the exchanging from the .log taking into account the time in the log and so you don't need to do anything. But I don't know how Demux.pl works :(
Francesco 2013/4/4 João Henriques <joao.henriques.32...@gmail.com> > That's terrible! I was just about to restart 2 hefty REMD simulations... > Maybe I can move the original log files somewhere and combine them with the > restart ones afterwards by using a script. It's just an idea, because I > need to run Demux.pl on the final concatenated log file. > > Any other issues I should be aware of? > > Best regards, > João Henriques > > > On Thu, Apr 4, 2013 at 12:18 PM, francesco oteri > <francesco.ot...@gmail.com>wrote: > > > This is what I meant, > > in particular it is a problem when I want to analyze > > the data regarding the exchange probability. > > > > Francesco > > > > 2013/4/4 João Henriques <joao.henriques.32...@gmail.com> > > > > > So let me see if I understood what Francesco said correctly. > Restarting a > > > REMD job after hitting the cluster wall-time limit resets the > information > > > stored in the log files? Can someone shed some light on this subject? > > > > > > Best regards, > > > João Henriques > > > -- > > > gmx-users mailing list gmx-users@gromacs.org > > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > > * Please search the archive at > > > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > > * Please don't post (un)subscribe requests to the list. Use the > > > www interface or send it to gmx-users-requ...@gromacs.org. > > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > > > > > > > > -- > > Cordiali saluti, Dr.Oteri Francesco > > -- > > gmx-users mailing list gmx-users@gromacs.org > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > * Please search the archive at > > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > * Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to gmx-users-requ...@gromacs.org. > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > > > -- > João Henriques > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- Cordiali saluti, Dr.Oteri Francesco -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
