Hi Albert, one reason for the error you see could be that you are using a non-Intel MPI compiler wrapper. I think you need to specify MPICC=mpiicc as well.
Carsten On Apr 5, 2013, at 12:25 PM, Albert <mailmd2...@gmail.com> wrote: > Hello: > > I am trying to compile gromacs with intel compiler. However, it failed when I > compile FFTW3 with command: > > > ./configure --enable-sse --enable-float --with-pic --enable-single > --enable-static --enable-mpi --prefix=/home/albert/install/fftw-3.3.3 CC=icc > CXX=icc F77=ifort > > here is the log file: > > mp.c:(.text+0x3148): undefined reference to `_intel_fast_memset' > ../libbench2/libbench2.a(mp.o):mp.c:(.text+0x3488): more undefined references > to `_intel_fast_memset' follow > collect2: ld returned 1 exit status > make[3]: *** [mpi-bench] Error 1 > make[3]: Leaving directory `/home/albert/install/00-source/fftw-3.3.3/mpi' > make[2]: *** [all] Error 2 > make[2]: Leaving directory `/home/albert/install/00-source/fftw-3.3.3/mpi' > make[1]: *** [all-recursive] Error 1 > make[1]: Leaving directory `/home/albert/install/00-source/fftw-3.3.3' > > > make: *** [all] Error 2 > > thank you very much > best > Albert > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the www interface > or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- Dr. Carsten Kutzner Max Planck Institute for Biophysical Chemistry Theoretical and Computational Biophysics Am Fassberg 11, 37077 Goettingen, Germany Tel. +49-551-2012313, Fax: +49-551-2012302 http://www.mpibpc.mpg.de/grubmueller/kutzner http://www.mpibpc.mpg.de/grubmueller/sppexa -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists