On Tue, Apr 9, 2013 at 12:21 PM, Andrew DeYoung <adeyo...@andrew.cmu.edu>wrote:
> Thank you, Justin. This is very helpful to me, especially the link to the > GPU conference, which I think will be very helpful. > > I have done a little benchmarking on our ~7000 atom system, and in those > tests the scaling was excellent -- almost linear when comparing 4, 8, 12, > 16, 24 CPUs. I am using particle decomposition, though; the results might > be different with domain decomposition, I guess. > > Yes, DD should be much faster than PD. -Justin -- ======================================== Justin A. Lemkul, Ph.D. Research Scientist Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu | (540) 231-9080http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin ======================================== -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
