On 4/14/13 8:00 PM, Nilesh Dhumal wrote:

-ac: average over all autocorrelations of the existence functions (either
0 or 1) of all hydrogen bonds.

Program collect the data 0 or 1 along time?


The presence of a hydrogen bond is a binary function. Either it exists (1) or does not (0). Whether or not a hydrogen bond exists depends on distance and angle criteria.

-Justin

--
========================================

Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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