Dear Gmx Users, I want to calculate a distance matrix of each amino acid (1, 2, ...25) averaged over simulation time with all amino acids. So matrix of 25x25:
1) is there a tool which can do this or just the use of g_dist fof 600 (25x25 - 25) times? 2) Would you recommend any nice visualisation tool (bioinformatic software) to obtain colorful matrix? Thank you in advance, Steven -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
