On 4/16/13 1:13 PM, Albert wrote:
Hi Justin:
thanks for kind reply.
Yes, there many atom clashes in CHARMM-GUI system, so I add very strong force
on protein and ligands, and try to minimize the rest of the system....
do you have any idea how can I solve the issue and make it work?
Create a more physically reasonable starting structure.
-Justin
--
========================================
Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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