Hello all, I ran 10ns molecular dynamics simulation of protein ligand complex ..in which protein homology model..finally i analyzed .xtc file which is produced after MD production run..first i plotted RMSD profile of backbone of the protein ..it show that line starts from 0.2 nm to 0.4 nm and from it is stabilized in plateau..
My question is fluctuation in RMSD profile from 0.2nm to 0.4 nm is acceptable range or not? Can any body explain this Thank you very much Cheers, Nitin -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
