I have read the paper of "Application of Mean Field Boundary Potentials in Simulations of Lipid Vesicles" carefully ,and I have just read the Louhivuori-PNAS paper.
However,I didn't find what I want. I will make the question clear. In the paper,it said " In order to resolve this issue, artificial pores were introduced into the vesicle. To achieve this, a purely repellent cylindrical potential with a force constant of 50 kJ mol-1 nm-2 and a radius of R ) 1.8 nm diameter was used." My question is : Whether the artificial pores method has been implemented or not in the MFFA version of Gromacs? At 2013-04-27 16:02:06,"XAvier Periole" <[email protected]> wrote: > >It is not clear what you are asking. Could you try to reformulate your >problem/question? > >Did you read the Louhivuori-PNAS papers? There are lots of details in the >supplementary material. > >On Apr 27, 2013, at 6:43, "song.yongshun" <[email protected]> wrote: > >> Dear all: >> I was using the MFFA version of Gromacs which is provided by m.j.louhivuori >> at http://md.chem.rug.nl/~mara/mffa.html. >> I have some quesition about this version: >> >> i.I saw the implementation of MFFA always with the flip-flop of lipid.Can I >> apply the flip-flop with this MFFA version of Gromacs ? >> ii.I also saw the description of implementation of MFFA along only one >> direction.Is this available in this MFFA version of Gromacs? >> >> >> Anyone who is familar with it help me. >> -- >> gmx-users mailing list [email protected] >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> * Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> * Please don't post (un)subscribe requests to the list. Use the >> www interface or send it to [email protected]. >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >-- >gmx-users mailing list [email protected] >http://lists.gromacs.org/mailman/listinfo/gmx-users >* Please search the archive at >http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >* Please don't post (un)subscribe requests to the list. Use the >www interface or send it to [email protected]. >* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
