Dear gmx-users, I got the following error after issuing the final command for running 12 replicas :-
[bme:42039] *** Process received signal *** [bme:42039] Signal: Segmentation fault (11) [bme:42039] Signal code: Invalid permissions (2) [bme:42039] Failing at address: 0x7f093b655340 [bme:42039] [ 0] /lib64/libpthread.so.0() [0x329220f500] [bme:42039] [ 1] /opt/bio/gromacs/lib/libgmx_mpi.so.6(nb_kernel_allvsallgb_sse2_single+0x2337) [0x7f093c281fa7] [bme:42039] [ 2] /opt/bio/gromacs/lib/libgmx_mpi.so.6(do_nonbonded+0xa96) [0x7f093c2175d6] [bme:42039] [ 3] /opt/bio/gromacs/lib/libmd_mpi.so.6(do_force_lowlevel+0x2fa) [0x7f093ca47b3a] [bme:42039] [ 4] /opt/bio/gromacs/lib/libmd_mpi.so.6(do_force+0xeb7) [0x7f093cadc6f7] [bme:42039] [ 5] mdrun(do_md+0x6a45) [0x42c245] [bme:42039] [ 6] mdrun(mdrunner+0xa59) [0x421309] [bme:42039] [ 7] mdrun(main+0x12fd) [0x4317dd] [bme:42039] [ 8] /lib64/libc.so.6(__libc_start_main+0xfd) [0x329161ecdd] [bme:42039] [ 9] mdrun() [0x405a29] [bme:42039] *** End of error message *** Wrote pdb files with previous and current coordinates [bme:42036] *** Process received signal *** [bme:42036] Signal: Segmentation fault (11) [bme:42036] Signal code: Invalid permissions (2) [bme:42036] Failing at address: 0x7f794bbe3800 [bme:42036] [ 0] /lib64/libpthread.so.0() [0x329220f500] [bme:42036] [ 1] /opt/bio/gromacs/lib/libgmx_mpi.so.6(nb_kernel_allvsallgb_sse2_single+0x13e2) [0x7f794c4b8052] [bme:42036] [ 2] /opt/bio/gromacs/lib/libgmx_mpi.so.6(do_nonbonded+0xa96) [0x7f794c44e5d6] [bme:42036] [ 3] /opt/bio/gromacs/lib/libmd_mpi.so.6(do_force_lowlevel+0x2fa) [0x7f794cc7eb3a] [bme:42036] [ 4] /opt/bio/gromacs/lib/libmd_mpi.so.6(do_force+0xeb7) [0x7f794cd136f7] [bme:42036] [ 5] mdrun(do_md+0x6a45) [0x42c245] [bme:42036] [ 6] mdrun(mdrunner+0xa59) [0x421309] [bme:42036] [ 7] mdrun(main+0x12fd) [0x4317dd] [bme:42036] [ 8] /lib64/libc.so.6(__libc_start_main+0xfd) [0x329161ecdd] [bme:42036] [ 9] mdrun() [0x405a29] [bme:42036] *** End of error message *** [bme:42042] *** Process received signal *** [bme:42042] Signal: Segmentation fault (11) [bme:42042] Signal code: Address not mapped (1) [bme:42042] Failing at address: 0x7f119c3b96b0 [bme:42042] [ 0] /lib64/libpthread.so.0() [0x329220f500] [bme:42042] [ 1] /opt/bio/gromacs/lib/libgmx_mpi.so.6(nb_kernel_allvsallgb_sse2_single+0x1345) [0x7f11972e2fb5] [bme:42042] [ 2] /opt/bio/gromacs/lib/libgmx_mpi.so.6(do_nonbonded+0xa96) [0x7f11972795d6] [bme:42042] [ 3] /opt/bio/gromacs/lib/libmd_mpi.so.6(do_force_lowlevel+0x2fa) [0x7f1197aa9b3a] [bme:42042] [ 4] /opt/bio/gromacs/lib/libmd_mpi.so.6(do_force+0xeb7) [0x7f1197b3e6f7] [bme:42042] [ 5] mdrun(do_md+0x6a45) [0x42c245] [bme:42042] [ 6] mdrun(mdrunner+0xa59) [0x421309] [bme:42042] [ 7] mdrun(main+0x12fd) [0x4317dd] [bme:42042] [ 8] /lib64/libc.so.6(__libc_start_main+0xfd) [0x329161ecdd] [bme:42042] [ 9] mdrun() [0x405a29] [bme:42042] *** End of error message *** -- Bharat -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists