Hi,

I know there have been many threads talking about parameterization of novel 
molecules for simulations within gromacs, but I just wanted to know if anyone 
had done any parameterization of myristic acid, as I intend to begin 
simulations on a protein that is myristolated and figured I'd check here before 
embarking on what sounds like it will be a very long and confusing process for 
a parameterization-newbie.

I found a paper in which they've used myristic acid within their simulations 
(Ariel Alvarez et al., 2012, J.Biophys. 
http://www.hindawi.com/journals/jbp/2012/642745/) however they've only listed 
the topology coordinates of this molecule. Is it possible to create a .rtp from 
this topology? Would this require parameterization based on the force field I 
am using? If so where would I find information on the bond angles and dihedrals 
for this?

Any advice on creating a .rtp file would be greatly appreciated!!

Thanks
Natalie

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