On 28.05.2013 13:39, vidhya sankar wrote:
cmake .. -DCMAKE_INSTALL_PREFIX=/usr/local/gromacs4.6 -DGMX_DOUBLE=ON 
-DGMX_BINARY_SUFFIX=_d

please try

cmake .. -DGMX_CPU_ACCELERATION=SSE4.1 -DCMAKE_INSTALL_PREFIX=/usr/local/gromacs4.6 -DGMX_DOUBLE=ON -DGMX_BINARY_SUFFIX=_d

I remember to have encountered a problem with older gccs and AVX.

M.

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