Chaban, why are you advising MARTINI? It is a coarse-grained force field, one should be well aware of the limitations etc. before deciding to choose it, it's not just "another force field".
2013/5/28 Dr. Vitaly Chaban <vvcha...@gmail.com> > without knowing full details of your simulated system and the goals you > pose, I cannot advise anything more definite than I did before. > > if I were you and my system were yours, I would start with MARTINI FF. > > I wish you a success in your endeavor. > > Dr. Vitaly Chaban > > > > > On Tue, May 28, 2013 at 6:11 PM, Revthi Sanker <revthi.san...@yahoo.com > >wrote: > > > > > > > Dear Sir, > > Thank you so much for your reply. To be specific, my system has only four > > lipid moities- 2 cholesteryl oleates and 2 phosphotidyl cholines. But I > was > > not able to get all atom paramters for these lipids from the lipid book( > > only united atom parameters were available). So I had resorted to using > > united atom for the whole system. But I am afraid if I am missing out on > > some crucial protein-drug interactions because of this united atom > > consideration. > > Kindly guide me in this regard. > > Thank you so much once again. > > > > Yours sincerely, > > Revathi > > M.S.Research Scholar > > Indian Institute of Technology Madras > > India > > > > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists