Search again. The syntax for invoking dssp changed at some point and it took a while before do_dssp adapted to that. If your do_dssp is lacking the -ver option then I'm quite confident that it uses the old syntax, which doesn't work with the newer versions (v. 2.0+ I think) of dssp.
Erik On 12 Jun 2013, at 11:17, Nikunj Maheshwari <nixcrazyfor...@gmail.com> wrote: > Yes I did searched. But for most people, there were issues regarding the > path or wrong DSSP. > DSSP runs for me, but do_dssp does not. > > > On Wed, Jun 12, 2013 at 2:25 PM, Erik Marklund <er...@xray.bmc.uu.se> wrote: > >> Hi, >> >> Search the mailing list. This problem and its solution has been repeatedly >> discussed. >> >> Erik >> >> On 12 Jun 2013, at 10:31, Nikunj Maheshwari <nixcrazyfor...@gmail.com> >> wrote: >> >>> Dear all, >>> >>> I installed dssp (Version 2.0.4) and it works perfect on a .pdb file. >>> I am trying to use it for do_dssp command but get the following error >> each >>> time: >>> >>> "Fatal error: >>> Failed to execute command: /usr/local/bin/dssp -na ddtmi68v ddwLuK68 > >>> /dev/null 2> /dev/null >>> " >>> >>> Is there any way to rectify it? >>> >>> Thanks. >>> Nikunj >>> -- >>> gmx-users mailing list gmx-users@gromacs.org >>> http://lists.gromacs.org/mailman/listinfo/gmx-users >>> * Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >>> * Please don't post (un)subscribe requests to the list. Use the >>> www interface or send it to gmx-users-requ...@gromacs.org. >>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> >> -- >> gmx-users mailing list gmx-users@gromacs.org >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> * Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> * Please don't post (un)subscribe requests to the list. Use the >> www interface or send it to gmx-users-requ...@gromacs.org. >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
