GROMACS is not yet magic. You used an atom type not found in your force field. Over to you. :-)
Mark On Jun 18, 2013 5:23 AM, "Hasni Arsad" <[email protected]> wrote: > Hi, > > I got this error massage when execute this command- grompp -f em.mdp -c > solvated.pdb -p topol.top > > > > Program grompp, VERSION 4.6.2 > Source code file: ..../gromacs-4.6.2/src/kernel/toppush.c, line: 1336 > > Fatal error: > Atomtype NPYL not found > For more information and tips for troubleshooting, please check the GROMACS > website at http://www.gromacs.org/Documentation/Errors > > > comment please!!!!! > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
