On 06/27/2013 01:50 PM, Justin Lemkul wrote:

Then select by residue number. Note that genrestr will only work for the first molecule, since position restraint numbering is based on the [moleculetype] numbering, not the coordinate file numbering.

-Justin


thank you very much for kind advices.

I solved this by extracting each chain into indivisual coordinate and make restrain based on them.

best
Albert
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