Soneone said here that static versions are impossible for Cray...
Dr. Vitaly V. Chaban On Fri, Jul 19, 2013 at 12:55 PM, Andrew R Turner <a.tur...@epcc.ed.ac.uk>wrote: > Hi > > I am having problems creating static versions of the GROMACS binaries for > a Cray XE6 (www.hector.ac.uk). The build process I am using is documented > at: > > http://www.hector.ac.uk/**support/documentation/** > software/gromacs/compiling_4-**6-1_phase3.php<http://www.hector.ac.uk/support/documentation/software/gromacs/compiling_4-6-1_phase3.php> > > and successfully produced static binaries for 4.6.1. Has something changed > in the new version? > > In particular, I am setting: > > -DCMAKE_SKIP_RPATH=YES > -DBUILD_SHARED_LIBS=OFF > -DGMX_PREFER_STATIC_LIBS=ON > -DCMAKE_C_FLAGS="-static -O3 -ftree-vectorize -ffast-math -funroll-loops" > -DCMAKE_CXX_FLAGS="-static -O3 -ftree-vectorize -ffast-math -funroll-loops" > > but still get dynamic executables: > > gmx@hector-xe6-5:~/4.6.3-**phase3/bin> ldd grompp > linux-vdso.so.1 => (0x00007fff00da2000) > libm.so.6 => /lib64/libm.so.6 (0x00007f50dc58f000) > libpthread.so.0 => /lib64/libpthread.so.0 (0x00007f50dc371000) > libAtpSigHandler.so.0 => /opt/cray/lib64/**libAtpSigHandler.so.0 > (0x00007f50dc16b000) > libgfortran.so.3 => /opt/gcc/4.7.2/snos/lib64/**libgfortran.so.3 > (0x00007f50dbe54000) > libscicpp_gnu.so.2 => /opt/cray/lib64/libscicpp_gnu.**so.2 > (0x00007f50dbc4a000) > libsci_gnu_mp.so.2 => /opt/cray/lib64/libsci_gnu_mp.**so.2 > (0x00007f50d72ec000) > libstdc++.so.6 => /opt/gcc/4.7.2/snos/lib64/**libstdc++.so.6 > (0x00007f50d6fdf000) > libfftw3_mpi.so.3 => /opt/cray/lib64/libfftw3_mpi.**so.3 > (0x00007f50d6dc6000) > libfftw3f_mpi.so.3 => /opt/cray/lib64/libfftw3f_mpi.**so.3 > (0x00007f50d6bae000) > libfftw3_threads.so.3 => /opt/cray/lib64/libfftw3_**threads.so.3 > (0x00007f50d69a6000) > libfftw3f_threads.so.3 => /opt/cray/lib64/libfftw3f_**threads.so.3 > (0x00007f50d679d000) > libfftw3.so.3 => /opt/cray/lib64/libfftw3.so.3 (0x00007f50d63a2000) > libfftw3f.so.3 => /opt/cray/lib64/libfftw3f.so.3 > (0x00007f50d5f7c000) > libmpich_gnu_47.so.1 => /opt/cray/lib64/libmpich_gnu_**47.so.1 > (0x00007f50d5add000) > libmpichf90_gnu_47.so.1 => /opt/cray/lib64/libmpichf90_**gnu_47.so.1 > (0x00007f50d58da000) > libmpl.so.0 => /opt/cray/lib64/libmpl.so.0 (0x00007f50d56d5000) > librt.so.1 => /lib64/librt.so.1 (0x00007f50d54cb000) > libxpmem.so.0 => /opt/cray/xpmem/default/lib64/**libxpmem.so.0 > (0x00007f50d52c9000) > libdmapp.so.1 => /opt/cray/dmapp/default/lib64/**libdmapp.so.1 > (0x00007f50d5092000) > libugni.so.0 => /opt/cray/ugni/default/lib64/**libugni.so.0 > (0x00007f50d4e72000) > libpmi.so.0 => /opt/cray/pmi/default/lib64/**libpmi.so.0 > (0x00007f50d4c51000) > libalpslli.so.0 => /usr/lib/alps/libalpslli.so.0 > (0x00007f50d4a4e000) > libalpsutil.so.0 => /usr/lib/alps/libalpsutil.so.0 > (0x00007f50d4849000) > libudreg.so.0 => /opt/cray/udreg/default/lib64/**libudreg.so.0 > (0x00007f50d4641000) > libgomp.so.1 => /opt/gcc/4.7.2/snos/lib64/**libgomp.so.1 > (0x00007f50d4432000) > libc.so.6 => /lib64/libc.so.6 (0x00007f50d40d3000) > libgcc_s.so.1 => /opt/gcc/4.7.2/snos/lib64/**libgcc_s.so.1 > (0x00007f50d3ebd000) > /lib/ld64.so.1 => /lib64/ld-linux-x86-64.so.2 (0x00007f50dc812000) > libquadmath.so.0 => /opt/gcc/4.7.2/snos/lib64/**libquadmath.so.0 > (0x00007f50d3c87000) > libcray_memcpy.so.0 => /opt/cray/lib64/libcray_**memcpy.so.0 > (0x00007f50d3a84000) > libopa.so.1 => /opt/cray/lib64/libopa.so.1 (0x00007f50d3882000) > librca.so.0 => /opt/cray/rca/default/lib64/**librca.so.0 > (0x00007f50d367d000) > libdl.so.2 => /lib64/libdl.so.2 (0x00007f50d3479000) > > Any ideas? > Andy > > > ==============================**=============== > Dr Andrew R. Turner > e: a.tur...@epcc.ed.ac.uk > skype: aturner-epcc > t: +44 (0)131 651 3578 > p: EPCC, University of Edinburgh EH9 3JZ > ==============================**=============== > > -- > The University of Edinburgh is a charitable body, registered in > Scotland, with registration number SC005336. > > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/**mailman/listinfo/gmx-users<http://lists.gromacs.org/mailman/listinfo/gmx-users> > * Please search the archive at http://www.gromacs.org/** > Support/Mailing_Lists/Search<http://www.gromacs.org/Support/Mailing_Lists/Search>before > posting! > * Please don't post (un)subscribe requests to the list. Use thewww > interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read > http://www.gromacs.org/**Support/Mailing_Lists<http://www.gromacs.org/Support/Mailing_Lists> > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists