Files: http://www.sendspace.com/file/vxcnv3
Commands used: http://pastebin.com/raw.php?i=wPqfuUwc What I want to do: I just want to run the protein without the ligand in explicit water. Why is the coordinate file not matching topology? http://www.gromacs.org/Documentation/Errors#Number_of_coordinates_in_coordinate_file_does_not_match_topologydoesn't offer much help in this case. I know the problem is the number of waters however. Thanks :) -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
