so how do i solve the protein.pdb issue?
On Sat, Aug 24, 2013 at 6:37 PM, Justin Lemkul <jalem...@vt.edu> wrote: > > > On 8/24/13 9:26 PM, The One And Only wrote: > >> that's something i know nothing about; I just graduated from high school >> and I have no background or experience in open source projects or programs >> like pymol/gromacs. My professor wants me to be able to produce a setup, >> simulation, and analysis within a week so I'm pretty desperate right now >> in >> terms of getting help. Do you know how to get the right .pdb file in my >> working directory? >> >> > Rudimentary Unix commands like cp and mv are covered in any Unix/Linux > tutorial. Google can find lots of good ones. Producing a quality > simulation cannot be rushed, and if you don't know the fundamentals of > navigating the command line and directory structure, it's nearly > impossible. You need to invest time in learning the environment before > doing anything, I'm afraid. Just to give a bit of perspective, we used to > train our undergrads for nearly a full semester (at least 2-3 months) > before requiring them to do any "real" work. At least a week or two of > that time was spent getting used to command line and Linux in general. > > -Justin > > -- > ==============================**==================== > > Justin A. Lemkul, Ph.D. > Postdoctoral Fellow > > Department of Pharmaceutical Sciences > School of Pharmacy > Health Sciences Facility II, Room 601 > University of Maryland, Baltimore > 20 Penn St. > Baltimore, MD 21201 > > jalemkul@outerbanks.umaryland.**edu <jalem...@outerbanks.umaryland.edu> | > (410) > 706-7441 > > ==============================**==================== > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/**mailman/listinfo/gmx-users<http://lists.gromacs.org/mailman/listinfo/gmx-users> > * Please search the archive at http://www.gromacs.org/** > Support/Mailing_Lists/Search<http://www.gromacs.org/Support/Mailing_Lists/Search>before > posting! > * Please don't post (un)subscribe requests to the list. Use the www > interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read > http://www.gromacs.org/**Support/Mailing_Lists<http://www.gromacs.org/Support/Mailing_Lists> > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
