The only integrators with stochastic force components are sd and bd. vrescale has a small stochastic component, but that is for the target kinetic energy, and is not a random force acting on each particle.
On Thu, Aug 29, 2013 at 3:15 PM, Ali Sinan Saglam <asinansag...@gmail.com> wrote: > Hi, > > I was planning to use the velocity verlet ingetrator (md-vv) with velocity > rescaling thermostat (tcoupl = v-rescale). I know that velocity rescaling > thermostat is a stochastic thermostat and uses a random seed and generally > with the stochastic thermostats one would use the sd integrator that uses > ld-seed = -1 option for a random seed. > > I was just wondering if one uses the velocity verlet integrator with a > stochastic thermostat does the ld-seed option work as it does with the sd > (or bd) integrator? (the manual currently doesn't say anything about this > http://manual.gromacs.org/online/mdp_opt.html#run) > > Best, > Ali Sinan Saglam > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
