dear users I'm studying gold nano-particle effect on one of the blood protein stability and structure. one time I simulated the protein in the presence of the gold nanoparticle and once without nanoparticles.
when I simulated protein alone in water, I expected the protein to remain stable but protein RMSD, gyration,dssp and .... graphs show protein structure is changing and protein helices are opening during the simulation. Thus, I can not study nanoparticle interaction effect on the protein structural changes , because the structural changes also observed in the absence of nanoparticle. I think there is a problem. What is the solution you offer me? What is the problem? sincerely Fatemeh Ramezani -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
