I am doing this tutorial: http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/biphasic/index.html
I have set up the randomly placed cyclohexane and water throughout the box. The problem is when i try the command "grompp -f em.mdp -c biphase.gro -p cyclohexane.top -o em.tpr" it errors telling me "No such moleculetype SOL". I know SOL is water, and the .top file does not include any sort of .itp that includes water. I've tried to add "#include "amber99sb.ff/forcefield.itp"" with no avail. This is strictly just cyclohexane and water, I am not interested in putting a protein inside of it. Commands used: http://pastebin.com/raw.php?i=RaKNCpi4 Files: http://www.sendspace.com/file/ibwk3l Thank you, the help you guys give is extremely appreciated :) -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
