Is that residue in a loop?
Gianluca
On Wed, 9 Oct 2013, Sainitin Donakonda wrote:
Hi all,
I recently performed MD simulation of protein - ligand complex..and
analyzed its trajectory using RMSF tool in gromacs.
This analysis revealed particular residue in binding site of protein showed
quite high fluctuation around 0.30 nm but other residues were in range of
0.15 to 0.20
Can any body explain why this particular residue have high RMSF value in
compared to other residues
Thanks,
Nitin
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Gianluca Interlandi, PhD gianl...@u.washington.edu
+1 (206) 685 4435
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Research Scientist at the Department of Bioengineering
at the University of Washington, Seattle WA U.S.A.
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