Yes it is a pity! But particle decomposition helps :)) well helped!
> > It's a shame that long distance restraints limit the parallalization so much, > but it is understandable. Thanks for helping me with this. > > Chris. > > -- original message -- > > Initializing Domain Decomposition on 8 nodes > Dynamic load balancing: auto > Will sort the charge groups at every domain (re)decomposition > Initial maximum inter charge-group distances: > two-body bonded interactions: 2.636 nm, Dis. Rest., atoms 1701 4425 > multi-body bonded interactions: 0.479 nm, CMAP Dih., atoms 1062 1081 > Minimum cell size due to bonded interactions: 2.899 nm > Maximum distance for 7 constraints, at 120 deg. angles, all-trans: 1.172 nm > Estimated maximum distance required for P-LINCS: 1.172 nm > Using 0 separate PME nodes, as there are too few total > nodes for efficient splitting > Scaling the initial minimum size with 1/0.8 (option -dds) = 1.25 > Optimizing the DD grid for 8 cells with a minimum initial size of 3.624 nm > The maximum allowed number of cells is: X 1 Y 1 Z 2 > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists