Hi Shahab, What about running trjconv -pbc mol with a .tpr as input file?
Cheers, Tsjerk On Sun, Oct 27, 2013 at 3:24 PM, shahab shariati <shahab.shari...@gmail.com>wrote: > Dear Justin > > I attached images related to before (em2.gro) and after equilibration. > > > https://www.dropbox.com/s/yjkyj5ycshvp20u/images.docx > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- Tsjerk A. Wassenaar, Ph.D. -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
