Thank you sir for the prompt reply. *g_msd -f traj.xtc -s topol.tpr -n msd.ndx -lateral z -o msd.xvg -tu ns* Here I am giving -lateral z (like for membrane simulations). Is it fine for spherical systems also?
On Tue, Nov 12, 2013 at 5:32 PM, Dr. Vitaly Chaban <vvcha...@gmail.com>wrote: > MSD is 3D by default. > > > Dr. Vitaly V. Chaban > > > On Tue, Nov 12, 2013 at 6:01 AM, Venkat Reddy <venkat...@gmail.com> wrote: > > Dear all, > > I am simulating a spherical lipid vesicle. I want to calculate the > > diffusion coefficient for each lipid component in 3D. How to calculate it > > using g_msd (or any other tool like g_velacc)? > > > > Thank you for your concern > > > > -- > > With Best Wishes > > Venkat Reddy Chirasani > > -- > > gmx-users mailing list gmx-users@gromacs.org > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > * Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to gmx-users-requ...@gromacs.org. > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- With Best Wishes Venkat Reddy Chirasani PhD student Laboratory of Computational Biophysics Department of Biotechnology IIT Madras Chennai INDIA-600036 -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists