Thank you Sir, initially i was running on 60 threads, now i changed it to 100. simulation is running with out any error, but i found a note in the log file as fallows
#nodes mismatch, current program: 100 checkpoint file: 60 #PME-nodes mismatch, current program: -1 checkpoint file: 12 Gromacs binary or parallel settings not identical to previous run. Continuation is exact, but is not guaranteed to be binary identical. Initializing Domain Decomposition on 100 nodes is it a good idea to continue or shall i stick with 60 threads. -- View this message in context: http://gromacs.5086.x6.nabble.com/Restarting-a-simulation-after-replacing-an-empty-md-trr-file-tp5012443p5012463.html Sent from the GROMACS Users Forum mailing list archive at Nabble.com. -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists