I don't see anything that indicates a deadlock. In the logs, I just see 
normal deadline exceeded exceptions and stack traces of where it happened to 
be when it was cut off. I don't believe I've ever seen a log message with 
the deadlock situation.

I thought the explanation might be that non-loading requests are going to 
instances that are still starting but I can't prove that one yet and it's 
supposed to be fixed as of now.
http://code.google.com/p/googleappengine/issues/detail?id=5214

I'm still looking for a way to explain it and so far all I know is changing 
threadsafe to false resolves it.

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