FYI this is a known issue (#4395) http://code.google.com/p/google-web-toolkit/issues/detail?id=4395 and my latest update on that thread confirms what Didier stated above, put your database table definitions in a separate folder and just add that as an enhancement in the ORM settings (got to by selecting the project, choosing "Project|Properties" and then "Google|App Engine|ORM"
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