What about your structure of python project? Where do you put your third party packages? For example, I use GAE + Flask + Werkzeug + Jinja2, and put this packages to the 'libs' folder. And this folder under git or mercurial. >From time to time I update this packages and increase .git or .hg folder size. It's not cool! What about you (structure, third party packages, updating packages) ?
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