#376: data builder limited to `like concept_dimension.concept_path` metadata
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Reporter: dconnolly | Owner: dconnolly
Type: problem | Status: new
Priority: major | Milestone: data-domains3
Component: data-sharing | Resolution:
Keywords: | Blocked By:
Blocking: 191 |
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Changes (by dconnolly):
* cc: gpc-dev@… (removed)
* cc: mhoag, campbell, bos, preeder, tgreen, tmcmahon, ngraham (added)
Comment:
We just hit this limitation from a different direction: a query that uses
a **patient set as a criterion** resulted in the following symptoms:
{{{
+ python /usr/local/heron_extract/cdr2edc/edc_summary.py summarize
--identified working.db gpa2016-dict.csv
INFO:__main__:summarize(builder_db=working.db, identified=True,
contact_info=Falseby_encounter=False, keep_redundant=False
...
Traceback (most recent call last):
File "/usr/local/heron_extract/cdr2edc/edc_summary.py", line 1793, in
<module>
_trusted_main()
...
File "/usr/local/heron_extract/cdr2edc/edc_summary.py", line 1144, in
create_prep_tvar
section = RecordOrg.path_form(var.concept_path)
File "/usr/local/heron_extract/cdr2edc/edc_summary.py", line 1379, in
path_form
return FieldDef.name_from_hint(path.split('\\')[2])
IndexError: list index out of range
}}}
--
Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/376#comment:2>
gpc-informatics <http://informatics.gpcnetwork.org/>
Greater Plains Network - Informatics
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