Looking at the gpc lab terminology, it looks like we are missing lab units in the metadata. Does anyone have a complete set of lab metadata with units?
Phillip From: Dan Connolly <dconno...@kumc.edu<mailto:dconno...@kumc.edu>> Date: Monday, February 8, 2016 at 3:53 PM To: "gpc-dev@listserv.kumc.edu<mailto:gpc-dev@listserv.kumc.edu>" <gpc-dev@listserv.kumc.edu<mailto:gpc-dev@listserv.kumc.edu>> Subject: gpc-dev agenda and meeting notes for Feb 9 11am What else for tomorrow? Scribe volunteers are welcome. * 9 Feb 2016 GPC-Dev meeting notes<https://docs.google.com/document/d/14nmubyuOwTk_j0Mlt3JEL38rb45Ch1w7dauZ0qAuEig/edit#> Current proposal: ________________________________ 1. Convene, take roll, review records and plan next meeting * Meeting ID and access code: 817-393-381<https://global.gotomeeting.com/meeting/join/817393381>; call +1 (571) 317-3131 * roll: all 12DevTeams<https://informatics.gpcnetwork.org/trac/Project/wiki/DevTeams> represented? KUMC, CMH, UIOWA, WISC, MCW, MCRF, UMN, UNMC, UTHSCSA, UTSW, MU, IU (regrets) Reminder - put institution after your name in GoToMeeting preferences * today's scribe: IU ?? * reminders from current work by owner site<https://informatics.gpcnetwork.org/trac/Project/report/11>: * comments on the agenda? on last week’s notes (#12<https://informatics.gpcnetwork.org/trac/Project/ticket/12>)? recent tickets opened/closed<https://informatics.gpcnetwork.org/trac/Project/timeline> FYI (note also recent ticket comments report<https://informatics.gpcnetwork.org/trac/Project/report/13>): * #451 (X02 Application - NIH CTSA for Collaborative Innovation (Barohn PI)) closed<https://informatics.gpcnetwork.org/trac/Project/ticket/451#comment:2> * #472 (Assess quality and quantity of Wisconsin Medicaid data) created<https://informatics.gpcnetwork.org/trac/Project/ticket/472> - owner: btaylor #93 (federated login for GPC services such as babel) reopened<https://informatics.gpcnetwork.org/trac/Project/ticket/93#comment:21> * #398 (next-d post-award processes) closed<https://informatics.gpcnetwork.org/trac/Project/ticket/398#comment:3> * #399 (WISC ALS survey on regulatory stand-by) closed<https://informatics.gpcnetwork.org/trac/Project/ticket/399#comment:3> * Next Meeting: 16 Feb Scribe: LRU nominates IU, MU, UNMC, UTSW, etc.<https://informatics.gpcnetwork.org/trac/Project/ticket/12> 2. milestone:data-quality-q3<https://informatics.gpcnetwork.org/trac/Project/milestone/data-quality-q3> - Feb 15 * depgraph<https://informatics.gpcnetwork.org/trac/Project/depgraph/milestone/data-quality-q3> * alternative: PCORnet CDM * alternative: OHDSI tools 3. milestone:gpc-phase2-h1<https://informatics.gpcnetwork.org/trac/Project/milestone/gpc-phase2-h1> Feb 22 * CDM v3 - DRN OC timeline<https://pcornet.imeetcentral.com/drnoc-workgroups/file/43823210/> * #473 PCORnet CDMv3 SAS Readiness - poll by site (see below<https://docs.google.com/document/d/14nmubyuOwTk_j0Mlt3JEL38rb45Ch1w7dauZ0qAuEig/edit#heading=h.cqjoizou8i1l>) * #117 (SAS miniSentinel environment for the PCORNet DRN queries) closed<https://informatics.gpcnetwork.org/trac/Project/ticket/117#comment:14> as dup * #465 (date obfuscation (shifting) for PCORnet CDM queries) closed <https://informatics.gpcnetwork.org/trac/Project/ticket/465#comment:2>Somebody asked about this at the hackathon. Here’s your answer: “Per Russ in GPC PMO, closing until we see national governance around data. PerGPC DSA<https://informatics.gpcnetwork.org/trac/Project/wiki/GovernanceMaterials#DSA> have allowances to run queries around de-identified dates.” 4. next QA milestone * reproducible CDM refresh #160<https://informatics.gpcnetwork.org/trac/Project/ticket/160> * SHRINE / SNOW - #459<https://informatics.gpcnetwork.org/trac/Project/ticket/459> docs 5. milestone:adaptable-accrual<https://informatics.gpcnetwork.org/trac/Project/milestone/adaptable-accrual> Feb 29 * FW: PCORnet ADAPTABLE data strategy discussion<http://listserv.kumc.edu/pipermail/gpc-dev/2016q1/002424.html> Shelley Rusincovitch * slides, code, discussion thread<https://informatics.gpcnetwork.org/trac/Project/ticket/263#comment:29> * Did anyone attend? If so, debrief. 6. milestone:cohort-char1<https://informatics.gpcnetwork.org/trac/Project/milestone/cohort-char1> March 15 * #458<https://informatics.gpcnetwork.org/trac/Project/ticket/458>sqlite validation tool for Weight and Health survey<https://informatics.gpcnetwork.org/trac/Project/ticket/458> - done. #379<https://informatics.gpcnetwork.org/trac/Project/ticket/379>Link EHR data to Health and Medical Research Family Survey (HMRFS) 2 results <https://informatics.gpcnetwork.org/trac/Project/ticket/379>poll by phase 1 site for validation results, file upload status<https://redcap.gpcnetwork.org/redcap_v6.2.2/DataExport/index.php?pid=29&report_id=51>, data builder status * KUMC - n/a done * CMH * UIOWA * #220<https://informatics.gpcnetwork.org/trac/Project/ticket/220> data builder * WISC * #219<https://informatics.gpcnetwork.org/trac/Project/ticket/219> data builder status * MCW * #474 (DataBuilder at MCW)<https://informatics.gpcnetwork.org/trac/Project/ticket/474> * MCRF - n/a done * UMN * UNMC * UTHSCSA - n/a done * UTSW 7. milestone:gpc2sites<https://informatics.gpcnetwork.org/trac/Project/milestone/gpc2sites> March 1 (to March 30) * #239 (WISC cancer tumor registry terms and counts not available on GPC term ...) closed by kwanta<https://informatics.gpcnetwork.org/trac/Project/ticket/239#comment:32> - excellent news. * #443 IU Tumor Registry: demo in March timeline OK? 8. milestone:data-domains3<https://informatics.gpcnetwork.org/trac/Project/milestone/data-domains3> * #447<https://informatics.gpcnetwork.org/trac/Project/ticket/447> i2b2->redcap: rec_type -> type: did it work? 9. milestone:bariatric-study-data<https://informatics.gpcnetwork.org/trac/Project/milestone/bariatric-study-data> * There is an in-person kick-off meeting in DC February 25-26. (ticket:283#comment:11<https://informatics.gpcnetwork.org/trac/Project/ticket/283#comment:11>). 10. milestone:tapir-trial-1<https://informatics.gpcnetwork.org/trac/Project/milestone/tapir-trial-1> * #383: “delivery date for the feasibility query may be two months from now” 11. CDRN Demographic Table - the ask was not just for a Dec 16 meeting * #408 (collect Enrollment numbers for 2016 H1 interim report (milestone 2.3.5)) closed<https://informatics.gpcnetwork.org/trac/Project/ticket/408#comment:2> * #439 (Demographics breakdown for population for PCORI Reporting) closed<https://informatics.gpcnetwork.org/trac/Project/ticket/439#comment:12> 12. milestone:emr-align-mu2<https://informatics.gpcnetwork.org/trac/Project/milestone/emr-align-mu2> * #391 (Utilization of Epic internal mapping tables to link medications to RxNorm) closed<https://informatics.gpcnetwork.org/trac/Project/ticket/391#comment:3> - fixed in 03ff48c0b6ec #473 PCORnet CDMv3 SAS Readiness Site SAS CDM v3 Readiness Date/DQ Status Children's Mercy TBD Indiana U Regenstrief 3/1/16 Marshfield Clinic Completed DQ Med Coll Wisconsin 3/31/16 U of Minnesota AHC 3/31/16 U of Missouri HC 6/30/16 U of Nebraska 3/15/16 University of Iowa TBD University of Kansas DQ sent 2/2/16 UT San Antonio DQ sent 2/2/16 UT SW Med Ctr DQ sent 2/2/16 UW Madison 3/14/16 ________________________________ -- Dan ________________________________ UT Southwestern Medical Center The future of medicine, today.
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