Hi All, If you would like to take a look at the PCORI ontology of Jeff's, go to https://www.i2b2.org/webclient/ and replace the username "demo" with the username "pcori" (same password).
Thanks, Shawn. From: Russ Waitman [mailto:rwait...@kumc.edu] Sent: Wednesday, February 17, 2016 3:28 PM To: 'Morris, Michele' Cc: Klann, Jeffrey G.; Murphy, Shawn N.; GPC-DEV@LISTSERV.KUMC.EDU; Rachel Hess (rachel.h...@hsc.utah.edu) Subject: RE: Data Model Comparison - To send to PCORI and NCATS leadership Hi Michelle, I am trying to understand context. Are you asking me for a GPC interpretation of how we're populating those modifiers? We're trying to steer our ontologies in alignment with Jeff Klann's SCILHS work so we have a shot at linking up for also CTSA/NIH purposes but the tickets on our wiki wrt modifiers for PCORnet characteristics are I think largely tracked in https://informatics.gpcnetwork.org/trac/Project/query?group=status&milestone=data-domains3 So you can see a couple tickets commenting on those diagnoses and modifiers. Nathan may also have a quick pointer to our ETL code. Russ From: Morris, Michele [mailto:mi...@pitt.edu] Sent: Wednesday, February 17, 2016 10:00 AM To: James Campbell (campb...@unmc.edu<mailto:campb...@unmc.edu>); Russ Waitman Subject: RE: Data Model Comparison - To send to PCORI and NCATS leadership Hi Drs. Campbell and Waitman, Katrina is trying to finish up this DYAD comparison of the various projects and data models and had a question. In the original document there were several references to diagnosis. Can you tell me the differences between order diagnosis, encounter diagnosis, reason for encounter and problem list diagnosis? Do they all come from problem list or are some billing diagnosis or from some other context? Any guidance you can provide will be greatly appreciated. Thanks, Michele From: Becich, Michael J Sent: Monday, February 15, 2016 10:01 PM To: Borromeo, Charles; Romagnoli, Katrina Marcia; James Campbell (campb...@unmc.edu<mailto:campb...@unmc.edu>); Russ Waitman Cc: Visweswaran, Shyam; Cappella, Nickie; Shirey, Bill; Morris, Michele Subject: Data Model Comparison - To send to PCORI and NCATS leadership Katrina, Chuck and Shyam: OK...with the team's approval I will send a note to the PCORI and NCATS leadership (as well as Jim Campbell who was the original author and Russ Waitman). If anyone has any issue with this let me know as I will send this tomorrow if I don't receive further comment. Looping in Michelle and Bill... Mike Jim and Russ: Katrina Romagnoli (new PhD grad from Pitt's DBMI NLM TP), Chuck Borromeo (former tech lead for PaTH PCORI CDRN) and Shyam Visweswaran (faculty lead of our NCATS ACT-Network and BMI Component for CTSA) have collaborated on this data model comparison and if they agree to this final version (which now includes some info on BRIDG), I will send it to Olga Brahznik, Elaine Collier, Leslie Curtis, Rachel Fleurance and Maryann Zirkle. I promised we would finish this and share it back to the team at the last PCORI NCATS Informatics Dyad. It is my last piece of work now that I am off that committee and Russ is taking it over. Let me know if you want to be copied on the transmission to NCATS and PCORI leadership. Mike Michael J. Becich, MD PhD Associate Vice-Chancellor for Informatics in the Health Sciences Chairman and Professor, Department of Biomedical Informatics (http://www.dbmi.pitt.edu<http://www.dbmi.pitt.edu/>) University of Pittsburgh School of Medicine 5607 Baum Blvd, Rm. 502 Office - 412-648-9244 Cell - 412-606-6453 e-mail - bec...@pitt.edu<mailto:bec...@pitt.edu> Office Location - 5607 Baum Blvd, Rm. 521, Pittsburgh, PA 15206 Assistant - Linda Mignogna - e-mail - lk...@pitt.edu<mailto:lk...@pitt.edu> - phone - 412-648-9254 From: Borromeo, Charles Sent: Monday, February 15, 2016 4:42 PM To: Becich, Michael J; Romagnoli, Katrina Marcia Cc: Visweswaran, Shyam; Cappella, Nickie Subject: Re: Mapping of Sentinel CDM to OMOP's CDM Hi Mike, I think this represents a fairly comprehensive view of where these models intersect. Katrina, did the BRIDG info indicate the terminologies it used (ICD9, CPT, RxNORM ,etc.)? The BRIDG columns do not list that info. chuck From: "Becich, Michael J" <bec...@pitt.edu<mailto:bec...@pitt.edu>> Date: Monday, February 15, 2016 at 4:31 PM To: "Romagnoli, Katrina Marcia" <ka...@pitt.edu<mailto:ka...@pitt.edu>> Cc: Charles Borromeo <ch...@pitt.edu<mailto:ch...@pitt.edu>>, "Visweswaran, Shyam" <s...@pitt.edu<mailto:s...@pitt.edu>>, Nickie Cappella <n...@pitt.edu<mailto:n...@pitt.edu>> Subject: RE: FW: Mapping of Sentinel CDM to OMOP's CDM Thanx...do you think this is ready to share with NCATS ACT (Elaine Collier, Olga Brazhnik) and PCORI CDRN (Rachel Fleurence, Maryann Zirkle, Leslie Curtis and Russ Waitman) leadership? From: katrina...@gmail.com<mailto:katrina...@gmail.com> [mailto:katrina...@gmail.com] On Behalf Of Katrina Romagnoli Sent: Monday, February 15, 2016 3:35 PM To: Becich, Michael J Cc: Borromeo, Charles; Visweswaran, Shyam; Cappella, Nickie Subject: Re: FW: Mapping of Sentinel CDM to OMOP's CDM Attached is the updated version of the table with BRIDG information included, as best as Chuck and I could understand it from the attached documents. Thanks, Katrina On Wed, Feb 10, 2016 at 9:22 PM, Becich, Michael J <bec...@pitt.edu<mailto:bec...@pitt.edu>> wrote: Katrina, Chuck and Shyam: Was this taken into account in the Data Model Comparison you did? If not, can you update the model comparison and add BRIDG? FYI... Mike From: Stallings, Sarah [mailto:sarah.stalli...@vanderbilt.edu<mailto:sarah.stalli...@vanderbilt.edu>] Sent: Friday, January 08, 2016 1:58 PM To: listserv-i...@ctsacentral.org<mailto:listserv-i...@ctsacentral.org> Subject: [listserv-idtf] FW: Mapping of Sentinel CDM to OMOP's CDM From: "Rocca, Mitra" <mitra.ro...@fda.hhs.gov<mailto:mitra.ro...@fda.hhs.gov>> Date: Friday, January 8, 2016 at 11:47 AM To: Elaine Collier <colli...@mail.nih.gov<mailto:colli...@mail.nih.gov>>, "Brazhnik, Olga D (NIH)" <brazh...@mail.nih.gov<mailto:brazh...@mail.nih.gov>>, "Harris, Paul" <paul.a.har...@vanderbilt.edu<mailto:paul.a.har...@vanderbilt.edu>> Cc: "Stallings, Sarah" <sarah.stalli...@vanderbilt.edu<mailto:sarah.stalli...@vanderbilt.edu>> Subject: Mapping of Sentinel CDM to OMOP's CDM Dear Elaine, Olga and Paul: Happy new year to you. Attached please find the mapping I worked on with the OMOP team (Now OHDSI), however not the latest version of OHDSI CDM. The OHSDI's program managers have also mapped PCORNET CDM (Common Data Model) to OHDSI's CDM. I will get that for you as well. I emailed them prior to holidays and today again. I also mapped the OMOP CDM to the Biomedical Research Integrated Domain Group (BRIDG) model, which is now one of the HL7 standards and a collaboration of FDA, NCI, CDISC and HL7. Also attached to this email. The OHDSI team also mapped their CDM to i2b2's model. I will try to get that mapping for you as well. Regards. Mitra Mitra Rocca Senior Medical Informatician, CDER Health IT Board Lead Office of Translational Sciences Center for Drug Evaluation and Research (CDER) Food and Drug Administration White Oak, Bldg. 21, Rm. 4512 Phone (301) 796-2175<tel:%28301%29%20796-2175> Fax (301) 847-3529<tel:%28301%29%20847-3529> [cid:image003.jpg@01D14A12.B1C77280] From: Collier, Elaine (NIH/NCATS) [E] [mailto:colli...@mail.nih.gov] Sent: Monday, December 07, 2015 4:54 PM To: Rocca, Mitra Cc: Collier, Elaine S (NIH) Subject: RE: can you tell me name of the FDA person who has mapping of Sentinel to OHDSI? Thanks Mitra. My interest in your mapping of Sentinel to OHDSI that you mentioned is not so much related to CTSA program as to several other informatics projects including the NIH BD2K program. It would be an interesting set of data in the scheme of the many common data models and how we move across them. Thanks much if you can share, Elaine From: Rocca, Mitra (FDA/CDER) Sent: Monday, December 07, 2015 12:13 PM To: Informatics; Collier, Elaine (NIH/NCATS) [E] Cc: Stallings, Sarah Subject: RE: can you tell me name of the FDA person who has mapping of Sentinel to OHDSI? Hi Elaine: Of course. I will share it on the listserv. Elaine: we are sometimes on the IOM workshops together or ONC's working groups. I serve as the FDA representative on this task force. There are a few of us from FDA CDER assigned to various CTSA working groups by NCATS. I have been assigned to the informatics task force. I have spoken to Olga and Dr. Petra Kaufmann in the past. Thanks Mitra Mitra Rocca Senior Medical Informatician, CDER Health IT Board Lead Office of Translational Sciences Center for Drug Evaluation and Research (CDER) Food and Drug Administration White Oak, Bldg. 21, Rm. 4512 Phone (301) 796-2175<tel:%28301%29%20796-2175> Fax (301) 847-3529<tel:%28301%29%20847-3529> [cid:image004.jpg@01D14A10.FD95CC40] From: Informatics [mailto:c4.informatics...@ctsac4.org] Sent: Monday, December 07, 2015 11:56 AM To: Collier, Elaine S (NIH) Cc: Stallings, Sarah; Rocca, Mitra Subject: RE: can you tell me name of the FDA person who has mapping of Sentinel to OHDSI? Hi Elaine, I believe it was Mitra Rocca who has the mapping. Mitra, would you mind to share it with our listserv- listserv-i...@ctsacentral.org<mailto:listserv-i...@ctsacentral.org> ? C4 can also post it on our ROCKET<mailto:listserv-i...@ctsacentral.org> page as well. Thanks, Van Trieu| Program Coordinator Informatics Domain Task Force CTSA Consortium Coordinating Center (C4) Email: c4.informatics...@ctsac4.org<mailto:c4.informatics...@ctsac4.org> From: Stallings, Sarah Sent: Monday, December 07, 2015 8:46 AM To: Trieu, Van Khanh <van.k.tr...@vanderbilt.edu<mailto:van.k.tr...@vanderbilt.edu>> Subject: FW: can you tell me name of the FDA person who has mapping of Sentinel to OHDSI? Did you get the name of the FDA person on the call? Or were they listed in the call attendee list? From: Collier, Elaine (NIH/NCATS) [E] [mailto:colli...@mail.nih.gov] Sent: Friday, December 04, 2015 3:30 PM To: Stallings, Sarah <sarah.stalli...@vanderbilt.edu<mailto:sarah.stalli...@vanderbilt.edu>> Cc: Collier, Elaine (NIH/NCATS) [E] <colli...@mail.nih.gov<mailto:colli...@mail.nih.gov>> Subject: can you tell me name of the FDA person who has mapping of Sentinel to OHDSI? Or let me know if posted on ROCKET? Thanks! Elaine Collier, MD Senior Advisor, Immediate Office of Director National Center for Advancing Translational Sciences -- To unsubscribe: email ctsa_members...@ctsac4.org<mailto:ctsa_members...@ctsac4.org>. If you unsubscribe you will no longer receive any meeting information. . --- You received this message because you are subscribed to the Google Groups "C4 Informatics DTF" group. To unsubscribe from this group and stop receiving emails from it, send an email to listserv-idtf+unsubscr...@ctsacentral.org<mailto:listserv-idtf+unsubscr...@ctsacentral.org>. The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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