That's awesome news Phillip! Russ
From: Gpc-dev [mailto:gpc-dev-boun...@listserv.kumc.edu] On Behalf Of Phillip Reeder Sent: Thursday, March 09, 2017 8:40 AM To: gpc-dev@listserv.kumc.edu Subject: SNOW Shrine Ontologies UTSW is now up and running on SNOW. In addition to getting our server on the SNOW network, I have the SCIHLS ontologies loaded up with meds, diagnosis, and procedures mapped and will be getting my demographics mapped shortly. Here's what I've done. For your local i2b2 terminology, use: https://github.com/SCILHS/scilhs-ontology/tree/master/Ontology There is a readme file which walks through the install of the terminology. There is a create script for the tables. Load the txt files containing the terminology into the tables. Then make any necessary local changes. For example, I changed the prefixes for ICD9 to ICD9CM, changed the CPT prefix, put my meds under their meds, etc. Basically whatever you need to get i2b2 to work for the SCIHLS paths. If you did this for the PCORI CDM, you can probably re-use a lot of that work. For Shrine use: https://open.med.harvard.edu/svn/shrine-ontology/PCORI/releases/PCORI%20Ontology%202.1/ Load the terminology into the SHRINE table. Create 1 entry table_cd 'SHRINE' in the table_access. Configure shrine.conf to use the PCORIMappings_WithCPT.csv<https://open.med.harvard.edu/svn/shrine-ontology/PCORI/releases/PCORI%20Ontology%202.1/PCORIMappings_WithCPT.csv> mapping file. Set your network status query. I used: networkStatusQuery = "\\\\SHRINE\\SHRINE\\DIAGNOSIS\\09\\(001-999.99) D~qlur\\(390-459.99) D~74r2\\(390-392.99) A~f1fu\\(392) Rheumati~ozvw\\(392.0) Rheuma~sdda\\<file:///\\SHRINE\SHRINE\DIAGNOSIS\09\(001-999.99)%20D~qlur\(390-459.99)%20D~74r2\(390-392.99)%20A~f1fu\(392)%20Rheumati~ozvw\(392.0)%20Rheuma~sdda\>" After you get your node on the SHRINE network, if you are using the terminologies I specified above, you should be able to query and get results from UTSW and any other sites that get the terminology loaded and mapped. I did confirm with Jeff Klahn that these are the current terminologies used by SCIHLS so I believe this will make the GPC SNOW SHRINE compatible with the SCIHLS SHRINE network. Phillip ________________________________ UT Southwestern Medical Center The future of medicine, today.
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