Dan, please, see attached file with updated version of LOINC codes. So, we could discuss it in today's 11am meeting. This one is better sorted and has each site counts (as they appear in babel) marked clearly. I will also add corrections to corresponding files on github latter today.
Thank you, Alona. On Mon, Apr 10, 2017 at 10:51 PM, Campbell, James R <campb...@unmc.edu> wrote: > We filed an update on #280 today and posted expanded medication metadata > to BABEL > Jim > > James R. Campbell MD > campb...@unmc.edu > Office: 402-559-7505 <(402)%20559-7505> > Secretary: 402-559-7299 <(402)%20559-7299> > Pager: 402-888-1230 <(402)%20888-1230> > > On Apr 10, 2017, at 2:45 PM, Dan Connolly <dconno...@kumc.edu> wrote: > > What else for tomorrow? > > - 11 Apr gpc-dev shared notes > > <https://docs.google.com/document/d/1KgQ8jFmyZ2WTM9tQVrLMrD91MV5Eb44uiQ6MSmXAU7g/edit> > scribe: KUMC > > ------------------------------ > > > 1. > > Convene, take roll, review records and plan next meeting(s) > 1. > > 11:00am Central Time. > Meeting ID and access code: 817-393-381 > <https://global.gotomeeting.com/meeting/join/817393381>; call +1 > (571) 317-3131 <(571)%20317-3131> > 2. > > roll: all 12 DevTeams > <https://informatics.gpcnetwork.org/trac/Project/wiki/DevTeams> > represented? KUMC, CMH, UIOWA, WISC, MCW, MCRF, UMN, UNMC, UTHSCSA, > UTSW, > MU, IU > Reminder - put institution after your name in GoToMeeting > preferences > 1. > > today's scribe: KUMC > 3. > > comments on the agenda? On last week’s notes? (#12 > <https://informatics.gpcnetwork.org/trac/Project/ticket/12>) > Recent tickets opened/closed > <https://informatics.gpcnetwork.org/trac/Project/timeline> - FYI > (i.e. not intended for discussion) > > > 1. > > #591 (PROCEDURES table: procedure orders? lab orders?) created > <https://informatics.gpcnetwork.org/trac/Project/ticket/591> > > > 1. > > Next Meeting: 18 Apr; scribe: UMN? > Note LRU scribe schedule in #12 > <https://informatics.gpcnetwork.org/trac/Project/ticket/12#comment:92> > 1. > > Integrating hospital billing: UHC ETL scripts > <http://listserv.kumc.edu/pipermail/gpc-dev/2017q1/003668.html> > - standing by > > > 1. > > Milestone:adaptable-monitor > > <https://informatics.gpcnetwork.org/trac/Project/milestone/adaptable-monitor> > due > 17 Apr(?) > 1. > > #478 <https://informatics.gpcnetwork.org/trac/Project/ticket/478> > ADAPTABLE > monitoring > <https://informatics.gpcnetwork.org/trac/Project/ticket/478> draft > adverse events query before we freeze our CDMs? > 2. > > Updated due date? > 2. > > Milestone:snow-shrine-1 > <https://informatics.gpcnetwork.org/trac/Project/milestone/snow-shrine-1> > due 17 Apr > 1. > > #525 <https://informatics.gpcnetwork.org/trac/Project/ticket/525> basic > SNOW ontology alignment: Demographics, Diagnoses > <https://informatics.gpcnetwork.org/trac/Project/ticket/525>JRC: to > ask Jeff Klann why Shrine has an ontology that starts with > \\SHRINE\SHRINE\Demographics and Pcori has \\PCORI_DEMO\PCORI\ > DEMOGRAPHICS > 2. > > Reminder to complete SNOW SHRINE 1.20.1 verification step! > <http://listserv.kumc.edu/pipermail/gpc-dev/2017q2/003781.html> Wanta > Keith > 3. > > Shrine Terminology Files - Oracle > <http://listserv.kumc.edu/pipermail/gpc-dev/2017q2/003805.html> > Phillip > Reeder > Dan to send them to those who express interest (e.g. Laura @ > UTHSCSA) within a few days > 3. > > Milestone:cdm-cycle3 > <https://informatics.gpcnetwork.org/trac/Project/milestone/cdm-cycle3> due > to DRN OC 24 Apr (trac checkpoint: 17 Apr) > 1. > > #580 <https://informatics.gpcnetwork.org/trac/Project/ticket/580> Data > Characterization - Cycle 2, Refresh 2 Tracking > <https://informatics.gpcnetwork.org/trac/Project/ticket/580> > 1. > > Confirm remaining 7 contacts to submit ADD to Duke REDCap > project: CMH (C4CMH), MCW (C4MCW), UIOWA (C4UI), MU (C4UMO), UNMC > (C4UN), > UTHSCSA (C4UTHSCSA), UTSW (C4UTSW) > 2. > > #589 (principal diagnosis 10% threshold in PCORNet CDM) created > <https://informatics.gpcnetwork.org/trac/Project/ticket/589> as > several sites are at-risk of having this issue continue beyond cycle > 2 > refresh 2 > 3. > > MU: plan for “ICD10 diagnosis codes do not appear to be valid > codes”? > 4. > > Any sites at-risk for 24 Apr? > > > 1. > > Milestone:next-d > <https://informatics.gpcnetwork.org/trac/Project/milestone/next-d> due > 9 May > 1. > > Due date is in preparation for 16 May next-d in-person meeting > 2. > > #444 <https://informatics.gpcnetwork.org/trac/Project/ticket/444> > Pregnancy > Status for NEXT-D > <https://informatics.gpcnetwork.org/trac/Project/ticket/444> MU, > can you try out the Apr 5 SQL Server code? > 3. > > #546 <https://informatics.gpcnetwork.org/trac/Project/ticket/546> Oracle > port of NextDextractionCode_12.1.16.sql > <https://informatics.gpcnetwork.org/trac/Project/ticket/546> and > factoring tabular data out of SQL code: > 1. > > med_info.csv > > <https://github.com/dckc/nextd-study-support/blob/master/med_info.csv> > - reduced 22 full scans of PRESCRIBING to 2 > 2. > > lab_review.csv > > <https://github.com/dckc/nextd-study-support/blob/master/lab_review.csv> > - WIP; stay tuned for update from Dr. Kho > 4. > > #551 <https://informatics.gpcnetwork.org/trac/Project/ticket/551> next-D > labs for cohort selection: fasting glucose, HbA1c > <https://informatics.gpcnetwork.org/trac/Project/ticket/551> > 1. > > comment:16: Apr 7 Update from GK @ MCW > 1. > > Next-D Glucose LOINC Code Analysis.xlsx > > <https://informatics.gpcnetwork.org/trac/Project/attachment/ticket/551/Next-D%20Glucose%20LOINC%20Code%20Analysis.xlsx> > > > <https://informatics.gpcnetwork.org/trac/Project/raw-attachment/ticket/551/Next-D%20Glucose%20LOINC%20Code%20Analysis.xlsx> > added by Kosinski (possible update to lab_review.csv) > 2. > > comment:18, comment:19: “Using the CDM lab table instead of the > i2b2 fact table is a reasonable alternative approach, but only if > all other > participating sites will have A1c and Glucose in there as well.” > 5. > > #590 <https://informatics.gpcnetwork.org/trac/Project/ticket/590> next-D > secure data transfer protocol > <https://informatics.gpcnetwork.org/trac/Project/ticket/590> > anybody else want to test? > 2. > > CRG rapid cycle grants > <http://listserv.kumc.edu/pipermail/gpc-dev/2017q2/003801.html> Russ > Waitman > FW: CRG rapid cycle grants > <http://listserv.kumc.edu/pipermail/gpc-dev/2017q2/003802.html> Russ > Waitman > 3. > > #431 <https://informatics.gpcnetwork.org/trac/Project/ticket/431> Deploy > free text notes and de-identification at majority of GPC sites (milestone > 2.12.1) > <https://informatics.gpcnetwork.org/trac/Project/ticket/431>#573 > <https://informatics.gpcnetwork.org/trac/Project/ticket/573> de-identified > text notes for on a cohort-by-cohort basis > <https://informatics.gpcnetwork.org/trac/Project/ticket/573>[Gpc-deid] > Agenda for todays webex meeting > <http://listserv.kumc.edu/pipermail/gpc-dev/2017q2/003795.html> Kowalski, > George > 4. > > Babel > 1. > > #370 (compresed file upload for use in babel DB IDE) reopened > > > <https://informatics.gpcnetwork.org/trac/Project/ticket/370#comment:6>error > on Babel upload > <http://listserv.kumc.edu/pipermail/gpc-dev/2017q2/003782.html> Debbie > Yoshihara > UNMC -- BABEL update issue, timing out when trying to send updated > metadata (SCILHS medications metadata) > <http://listserv.kumc.edu/pipermail/gpc-dev/2017q2/003800.html> Nathan > Graham > 2. > > #568 (Response on BABEL is painfully slow) closed > <https://informatics.gpcnetwork.org/trac/Project/ticket/568#comment:4> > worksforme > 5. > > listserv.kumc.edu woes > > ------------------------------ > > -- > Dan > > _______________________________________________ > Gpc-dev mailing list > Gpc-dev@listserv.kumc.edu > http://listserv.kumc.edu/mailman/listinfo/gpc-dev > > > The information in this e-mail may be privileged and confidential, > intended only for the use of the addressee(s) above. Any unauthorized use > or disclosure of this information is prohibited. If you have received this > e-mail by mistake, please delete it and immediately contact the sender. > -- Al’ona Furmanchuk, Ph.D. Research Associate Center for Health Information Partnerships, Northwestern University, Feinberg School of Medicine 633 N. Saint Clair Street, 20th floor, Chicago, IL 60611 Web: http://furmanchuk.com/ E-mail: alona.furmanc...@northwestern.edu <furmanc...@icnanotox.org> Phone: 312-503-34281
LOINClist_GPC-2017-04-11-AF.xlsx
Description: MS-Excel 2007 spreadsheet
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