What else for tomorrow?
* gpc-dev 23 May shared
notes<https://docs.google.com/document/d/1rbJdZDh5PgFyFkG7exx9drixSfkq0kfyyNhxojLb8CU/edit>;
scribe: CMH
________________________________
1. Convene, take roll, review records and plan next meeting(s)
* 11:00am Central Time.
Meeting ID and access code:
817-393-381<https://global.gotomeeting.com/meeting/join/817393381>; call +1
(571) 317-3131
* roll: all 12
DevTeams<https://informatics.gpcnetwork.org/trac/Project/wiki/DevTeams>
represented? KUMC, CMH, UIOWA, WISC, MCW, MCRF, UMN, UNMC, UTHSCSA, UTSW, MU, IU
Reminder - put institution after your name in GoToMeeting preferences
* today's scribe: CMH
* comments on the agenda? On last week’s notes?
(#12<https://informatics.gpcnetwork.org/trac/Project/ticket/12>)
Recent tickets
opened/closed<https://informatics.gpcnetwork.org/trac/Project/timeline> - FYI
(i.e. not intended for discussion)
*
* #574 (ADAPTABLE new computable phenotype total eligible)
closed<https://informatics.gpcnetwork.org/trac/Project/ticket/574#comment:12>
fixed
* #478 (ADAPTABLE monitoring)
closed<https://informatics.gpcnetwork.org/trac/Project/ticket/478#comment:34>
fixed
* Next Meeting: 30 May; scribe? UIOWA?
* Note LRU scribe schedule in
#12<https://informatics.gpcnetwork.org/trac/Project/ticket/12#comment:92>
2. Milestone:snow-shrine-1 due 29 May,
snow-shrine-2<https://informatics.gpcnetwork.org/trac/Project/milestone/snow-shrine-2>
* UTHSCSA - Keith started working with UTHSCSA over the last week?
3.
Milestone:next-d<https://informatics.gpcnetwork.org/trac/Project/milestone/next-d>
next checkpoint: 12 Jun
* #539<https://informatics.gpcnetwork.org/trac/Project/ticket/539>
comment:9 review of Proposed Formats for Data Extraction
Mei to follow up re encounter.facility_id
* #551<https://informatics.gpcnetwork.org/trac/Project/ticket/551>
next-D labs for cohort selection: fasting glucose, HbA1c
<https://informatics.gpcnetwork.org/trac/Project/ticket/551>NW to provide CSV
file
* #598 (integrate updated geocoding data from UMN) created
<https://informatics.gpcnetwork.org/trac/Project/ticket/598>Blocked by format
design issue #544
<https://informatics.gpcnetwork.org/trac/Project/ticket/544>ETA Aug
* #546<https://informatics.gpcnetwork.org/trac/Project/ticket/546>
Oracle port of
NextDextractionCode_12.1.16.sql<https://informatics.gpcnetwork.org/trac/Project/ticket/546>
- GK to pick this up
* #444<https://informatics.gpcnetwork.org/trac/Project/ticket/444>
pregnancy status for next-D. Since, MU reproduced results from proposal
NextDcodeForTable1_studyAndDMsampleExtraction.sql<https://github.com/dckc/nextd-study-support/blob/30506563485b2a887ae70559ac4e198127fcb5e2/NextDcodeForTable1_studyAndDMsampleExtraction.sql>
3050656 of Apr 6, this is closed fixed. (port to Oracle
#546<https://informatics.gpcnetwork.org/trac/Project/ticket/546> is ongoing)
4.
Gpc-phase2-h4<https://informatics.gpcnetwork.org/trac/Project/milestone/gpc-phase2-h4>
due July 31
* #573<https://informatics.gpcnetwork.org/trac/Project/ticket/573>
de-identified text notes for on a cohort-by-cohort
basis<https://informatics.gpcnetwork.org/trac/Project/ticket/573> -
intermediate milestone?
* #431<https://informatics.gpcnetwork.org/trac/Project/ticket/431>
Deploy free text notes and de-identification at majority of GPC sites
(milestone 2.12.1)<https://informatics.gpcnetwork.org/trac/Project/ticket/431>
5.
Milestone:cdm-cycle3<https://informatics.gpcnetwork.org/trac/Project/milestone/cdm-cycle3>
* #599 (i2p-transform oracle version for CDM 3.1)
created<https://informatics.gpcnetwork.org/trac/Project/ticket/599>: “Does
anybody know when there will be a new oracle version of i2p-transform that will
comply with CDM v3.1 specs for the next refresh?”
* #578<https://informatics.gpcnetwork.org/trac/Project/ticket/578> DC
Cycle 3 - Beta
Testing<https://informatics.gpcnetwork.org/trac/Project/ticket/578>
* #280<https://informatics.gpcnetwork.org/trac/Project/ticket/280>
Medication ontology orgainzed by
ingredient<https://informatics.gpcnetwork.org/trac/Project/ticket/280> - does
UNMC load MAR info into PROCEDURES?
* #591<https://informatics.gpcnetwork.org/trac/Project/ticket/591>
PROCEDURES table: procedure orders? lab orders?
<https://informatics.gpcnetwork.org/trac/Project/ticket/591>21 Mar: RW to
follow up with Kaiser and the Breast Cancer CRG and JRC to see how they are
doing the process.
* #589<https://informatics.gpcnetwork.org/trac/Project/ticket/589>
principal diagnosis 10% threshold in PCORNet CDM
<https://informatics.gpcnetwork.org/trac/Project/ticket/589>IU continues to
look into it as of Apr 4
6. GROUSE
* #597 (spec for crosswalk to accompany i2b2 datamarts for GROUSE)
created<https://informatics.gpcnetwork.org/trac/Project/ticket/597> - ok to
close?
7.
Milestone:cdm-c2r2<https://informatics.gpcnetwork.org/trac/Project/milestone/cdm-c2r2>
Experience reports
* CMH - Rita to get you a technical contact at Cerner. (Done Tuesday,
May 09, 2017 2:11 PM; Dan plans to follow-up)
* IU - Tony to share our i2p-transform changes.
* Please submit c2r2 EDC report to
https://redcap.gpcnetwork.org/surveys/?s=9LT4KE8NFD
8. JVM databuilder work continues; e.g. 18 May
a1f0fc8<https://bitbucket.org/gpcnetwork/heron_extract/commits/a1f0fc82b462e44d2753261193f9d4643950ce2c>
________________________________
--
Dan
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