Hi Dan, I might bring up in the context of RCR using the draft MED_ADMIN table and the fact that DRNOC is open for CDM 4 draft feedback till the end of the month (Oct 31st) I can also give an update from the data committee face to face this past Friday if there’s time at the end,
Russ From: Gpc-dev [mailto:gpc-dev-boun...@listserv.kumc.edu] On Behalf Of Dan Connolly Sent: Monday, October 09, 2017 2:38 PM To: gpc-...@listserv.kumc.edu; , Subject: GPC Dev / Cancer RCR Meeting agenda and meeting notes 10 Oct 2017 What else for tomorrow? * shared notes for 10 Oct<https://docs.google.com/document/d/1dDpw2vV7Zk8Aq3TO56FUDMkYXrB-brEI0w_lKYVPKXM/edit>; scribe: MCRF snapshot: ________________________________ 1. Convene, take roll, review records and plan next meeting(s) a. 11:00am Central Time. Meeting ID and access code: 817-393-381<https://global.gotomeeting.com/meeting/join/817393381>; call +1 (571) 317-3131 b. Roll: Reminder - put institution after your name in GoToMeeting preferences i. all 12 GPC DevTeams<https://informatics.gpcnetwork.org/trac/Project/wiki/DevTeams> represented? KUMC, CMH, UIOWA, WISC, MCW, MCRF/MCRI, UMN, UNMC, UTHSCSA, UTSW, MU, IU ii. Today’s meeting is joint with the Cancer RCR project iii. today's scribe: MCRF c. comments on the agenda? On last week’s notes? (#12<https://informatics.gpcnetwork.org/trac/Project/ticket/12>) Recent tickets opened/closed<https://informatics.gpcnetwork.org/trac/Project/timeline> - FYI (i.e. not intended for discussion) . ...none this week... d. Next Meeting: 24 Oct. scribe: ??? . 17 Oct cancelled due to conflict with GPC LEC 16-17 Oct<http://www.gpcnetwork.org/?q=2017LEC> i. Note LRU scribe schedule in #12<https://informatics.gpcnetwork.org/trac/Project/ticket/12#comment:97> 2. HackathonFive<https://informatics.gpcnetwork.org/trac/Project/wiki/HackathonFive> plann Feb 2018 . Dates for HackathonFive survey<https://redcap.kumc.edu/surveys/?s=RY8FAAJ7J3> 3. Milestone:cancer-rcr-1<https://informatics.gpcnetwork.org/trac/Project/milestone/cancer-rcr-1> due 13 Oct Cancer RCR Aim 1<https://docs.google.com/spreadsheets/d/1fY5rR0W4tUEslxjLcXo0J9kDcP2IY7G_i_7mKGr2S9o/edit#gid=1874960144> schedule spreadsheet; RCR listserv: gpc-rcr<http://listserv.kumc.edu/mailman/listinfo/gpc-rcr> . Putting med info in CDM (row 6) RW: to meet with Keith M. of DRN OC done: [Gpc-rcr] using Cancer RCR project for testing CDM 4.0 med admin table<http://listserv.kumc.edu/pipermail/gpc-rcr/2017-October/000011.html> Russ Waitman a. Site status (Brian G / UIOWA will add details below) . UNMC i. Indiana University (IU) ii. Louisiana State University (LSU) Health iii. Marshfield Clinic: LV iv. Medical College of Wisconsin (MCW) v. Missouri University (MU) vi. Medical University of South Carolina (MUSC) vii. U Florida viii. UIOWA - Smith ix. KUMC - Chandaka / Connolly #640<https://informatics.gpcnetwork.org/trac/Project/ticket/640> x. UMN - McKay xi. UTSW xii. Vanderbilt 4. Milestone:grouse-resdac-2<https://informatics.gpcnetwork.org/trac/Project/milestone/grouse-resdac-2> . #581 (Crosswalk files for the remaining 4 GPC sites back from GDIT) closed<https://informatics.gpcnetwork.org/trac/Project/ticket/581#comment:14> fixed a. #623 (training for GROUSE SQL queries) closed fixed<https://informatics.gpcnetwork.org/trac/Project/ticket/623#comment:3> b. #595 (collect several i2b2 datamarts for GROUSE) closed <https://informatics.gpcnetwork.org/trac/Project/ticket/595#comment:39>Gold stars for getting datamarts in before the LEC: MCW, UNMC, MCRF / MCRI, and UTSW c. #644 (collect remaining i2b2 datamarts for GROUSE) created<https://informatics.gpcnetwork.org/trac/Project/ticket/644> - anybody want to race with IU for the next gold star? 5. Milestone:snow-shrine-1<https://informatics.gpcnetwork.org/trac/Project/milestone/snow-shrine-1>, Milestone:snow-shrine-2<https://informatics.gpcnetwork.org/trac/Project/milestone/snow-shrine-2> . #631<https://informatics.gpcnetwork.org/trac/Project/ticket/631> NAACCR Tumor Registry query via GPS SNOW SHRINE<https://informatics.gpcnetwork.org/trac/Project/ticket/631> - UMN too! . See also NAACCR_ETL<https://informatics.gpcnetwork.org/trac/Project/wiki/NAACCR_ETL>, #185 (GPC cancer tumor registry ontology) reopened<https://informatics.gpcnetwork.org/trac/Project/ticket/185#comment:11> a. #532<https://informatics.gpcnetwork.org/trac/Project/ticket/532> SNOW SHRINE node at UNMC with SCILHS PCORnet ontology <https://informatics.gpcnetwork.org/trac/Project/ticket/532>News? b. #575<https://informatics.gpcnetwork.org/trac/Project/ticket/575> SNOW SHRINE 1.20.1 install for IU <https://informatics.gpcnetwork.org/trac/Project/ticket/575>News? c. #411<https://informatics.gpcnetwork.org/trac/Project/ticket/411> align SNOW SHRINE terminology with SCILHS Ontology <https://informatics.gpcnetwork.org/trac/Project/ticket/411>SNOW Shrine Ontology<http://listserv.kumc.edu/pipermail/gpc-dev/2017q4/004314.html> Andrew Hangsleben: “Out of curiosity, is there any reason we aren't using the PCORnet ontology directly in shrine instead of the shrine ontology + adapter mappings? Reeder: “That was a SCHILS decision. Our goal was to be compatible with their shrine, and that is how they did it. We followed.” Hangsleben: “but it might be simpler in the future if we used the PCORnet ontology. Then we could use an adapter mappings file that maps every term to itself like the ACT Shrine setup. Plus there would be no need to maintain the duplicate ontology in the database.” 6. Milestone:next-d<https://informatics.gpcnetwork.org/trac/Project/milestone/next-d> . #546<https://informatics.gpcnetwork.org/trac/Project/ticket/546> Oracle port of NextDextractionCode_12.1.16.sql<https://informatics.gpcnetwork.org/trac/Project/ticket/546> . Github #12 lab_review.csv and/or med_info.csv out-dates create table statements<https://github.com/kumc-bmi/nextd-study-support/issues/12> i. Github #14 SQLServer code out of date w.r.t. 2017-08-22-AF rev.<https://github.com/kumc-bmi/nextd-study-support/issues/14> a. #571<https://informatics.gpcnetwork.org/trac/Project/ticket/571> characterization of data from next-d GPC sites <https://informatics.gpcnetwork.org/trac/Project/ticket/571>Mei, how many do you have? ________________________________ -- Dan
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