Disabling openmp worked. Thanks. Unfortunately, there are still
architecture issues. After installing ("make install"), the following error
occurred when attempting to import graph-tool:
>>>>>>>
In [1]: import graph_tool
---------------------------------------------------------------------------
ImportError Traceback (most recent call last)
/Users/jberwald/<ipython-input-1-233a11917947> in <module>()
----> 1 import graph_tool
/usr/local/lib/python2.7/site-packages/graph_tool/__init__.py in <module>()
90
91 from dl_import import *
---> 92 dl_import("import libgraph_tool_core as libcore")
93 import libgraph_tool_core as libcore # for pylint
94 __version__ = libcore.mod_info().version
/usr/local/lib/python2.7/site-packages/graph_tool/dl_import.pyc in
dl_import(import_expr)
44 sys.setdlopenflags(RTLD_LAZY | RTLD_GLOBAL)
45
---> 46 exec import_expr in local_dict, global_dict
47
48 sys.setdlopenflags(orig_dlopen_flags) # reset it to normal
case to avoid
/Users/jberwald/<string> in <module>()
ImportError:
dlopen(/usr/local/lib/python2.7/site-packages/graph_tool/libgraph_tool_core.so,
9): no suitable image found. Did find:
/usr/local/lib/python2.7/site-packages/graph_tool/libgraph_tool_core.so:
mach-o, but wrong architecture
>>>>>>>
These architecture issues on Mac are mystifying to me. How can something be
built for the wrong architecture if I just compiled it for that
architecture? sigh... Thanks any help you can provide.
Jesse
ps--I've submitted a bug report at macports concerning the scipy universal
build problems.
On Sun, Nov 27, 2011 at 12:37 PM, Tiago Peixoto [via Main discussion list
for the graph-tool project] <[email protected]>wrote:
> Hi Jesse,
>
> On 11/27/2011 05:44 PM, jesse berwald wrote:
>
> > Here is my configure command:
> >
> > ./configure --enable-openmp --with-boost-python=boost_python_mt
> >
> --with-numpy=/Library/Frameworks/Python.framework/Versions/Current/lib/python2.7/site-packages/numpy
>
> >
> --with-scipy=/Library/Frameworks/Python.framework/Versions/Current/lib/python2.7/site-packages/scipy
>
> > LDFLAGS=-L/opt/local/lib CXXFLAGS="-I/opt/local/include"
> >
>
> [...]
>
> > graph_motifs.hh:415: internal compiler error: in lower_stmt, at
> > gimple-low.c:319
> > Please submit a full bug report,
> > with preprocessed source if appropriate.
> > See <URL:http://developer.apple.com/bugreporter> for instructions.
>
> An internal compiler error is always a bug in the compiler... This was
> caused because apple's GCC has broken support for OpenMP. Try again with
> the --disable-openmp option, and it should work.
>
> > Also, I attempted to install from macports originally. But macports
> tells me
> > the following:
> >
> > Error: Cannot install py27-graph-tool for the arch(s) 'i386 x86_64'
> because
> >> Error: its dependency py27-scipy does not build for the required
> >> arch(s) by default
> >> Error: and does not have a universal variant.
> >> Error: Unable to execute port: architecture mismatch
>
> It would be nice to submit a bug report to the macports people about
> this. Maybe they can fix the scipy portfile to allow an universal build.
> You can file a bug report here: https://trac.macports.org/report
>
> Cheers,
> Tiago
>
> --
> Tiago de Paula Peixoto <[hidden
> email]<http://user/SendEmail.jtp?type=node&node=3540418&i=0>>
>
>
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>
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