Am 08.10.20 um 17:16 schrieb j_nets: > but when I access the arrays within betas after they all just consist of 0 > values (through betas[i].get_array()) which makes me think I am not doing > this process correctly (the graph similarities with the posterior and actual > are also negligible~0.05).
You should pass something different than xstep=0 if you want the transmission rates to actually change during MCMC. Take a look at the documentation of: EpidemicsBlockState.mcmc_sweep() > Any help with this problem (I may be doing something very incorrect in the > process) and how to correctly implement an edge prior without knowledge of > the graph would be greatly appreciated as I would like to delve further into > these techniques. You cannot really change the prior of the edge transmission probabilities, since that is hard-coded for the uniform prior in this particular code. Best, Tiago -- Tiago de Paula Peixoto <ti...@skewed.de>
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